Changing patterns of eastern Mediterranean shellfish exploitation in the Late Glacial and Early Holocene: Oxygen isotope evidence from gastropod in Epipaleolithic to Neolithic human occupation layers at the Haua Fteah cave, Libya

The seasonal pattern of shellfish foraging at the archaeological site of Haua Fteah in the Gebel Akhdar, Libya was investigated from the Epipaleolithic to the Neolithic via oxygen isotope (d18O) analyses of the topshell Phorcus (Osilinus) turbinatus. To validate this species as faithful year-round palaeoenvironmental recorder, the intra-annual variability of d18O in modern shells and sea water was analysed and compared with measured sea surface temperature (SST). The shells were found to be good candidates for seasonal shellfish forging studies as they preserve nearly the complete annual SST cycle in their shell d18O with minimal slowing or stoppage of growth. During the terminal Pleistocene Early Epipaleolithic (locally known as the Oranian, with modeled dates of 17.2-12.5 ka at 2sigma probability, Douka et al., 2014), analysis of archaeological specimens indicates that shellfish were foraged year-round. This complements other evidence from the archaeological record that shows that the cave was more intensively occupied in this period than before or afterwards. This finding is significant as the period of the Oranian was the coldest and driest phase of the last glacial cycle in the Gebel Akhdar, adding weight to the theory that the Gebel Akhdar may have served as a refugium for humans in North Africa during times of global climatic extremes. Mollusc exploitation in the Latest Pleistocene and Early Holocene, during the Late Epipaleolithic (locally known as the Capsian, c. 12.7 to 9 ka) and the Neolithic (c. 8.5 to 5.4 ka), occurred predominantly during winter. Other evidence from these archaeological phases shows that hunting activities occurred during the warmer months. Therefore, the timing of Holocene shellfish exploitation in the Gebel Akhdar may have been influenced by the seasonal availability of other resources at these times and possibly shellfish were used as a dietary supplement when other foods were less abundant

Carbon isotope signatures from land snail shells: Implications for palaeovegetation reconstruction in the eastern Mediterranean

In this studywecompare carbon isotope values inmodern Helix melanostoma shell carbonate (d13Cshell) from the Gebel al-Akhdar region of Libya with carbon isotope values in H. melanostomabody tissue (d13Cbody), local vegetation (d13Cplant) and soil (d13Csoil). All vegetation in the study area followed the C3 photosynthetic pathway. However, the d13Cplant values of different species formed two distinct isotopic groups. This can be best explained by different water use efficiencies with arid adapted species having significantly more positive d13Cplant values than less water efficient species. The ranges and means of d13Cbody and d13Cplant were statistically indistinguishable from one another suggesting that d13Cbody was primarily a function of local vegetation composition. H. melanostoma d13Cshell reflected the d13Cplant of local vegetation with a positive offset between body/diet and shell of 14.5± 1.4‰. Therefore, in the Gebel al-Akhdar where only C3 plants are present, highermeand13C shell values likely reflect greater abundances ofwater-efficientC3 plants in the snails diet and therefore in the landscape, whilst lower mean d13Cshell values likely reflect the consumption of less water-efficient C3 plants. The distribution of these plants is in turn affected by environmental factors such as rainfall. These findings can be applied to archaeological and geological shell deposits to reconstruct late Pleistocene to Holocene vegetation change in the southeast Mediterranean

Fox\u27s 2-spheres are twist spun knots

A multi-proxy reconstruction of a sediment core from the Tatos basin in the Mauritian lowlands reveals a dynamic environmental history during the last 8000 years. Under influence of sea level rise, the basin progressed from a wetland to a shallow lake between 8000 and 2500 cal yr BP and it slowly changed back into a wetland after sea level reached its highest position at around 2500 cal yr BP. The groundwater level in the basin was strongly affected by sea level rise and precipitation-forced runoff through the porous volcanic bedrock.<br>Millennial-scale precipitation changes in the Mauritian lowlands were derived from the pollen records of semi-dry forest and palm woodland. Salinity and environmental reconstructions based on diatoms, ostracods, stable isotopes and sediment composition showed numerous decadal and centennial droughts and wet events. Mauritius experienced wet conditions between similar to 8000 and similar to 6800 cal yr BP, followed by decreasing humidity from 6800 to 6000 cal yr BP. Dry conditions persisted until similar to 1200 cal yr BP, after which wetter conditions have prevailed as recorded from Mauritian lowland and upland records. Climate dynamics reflects northern hemisphere monsoon activity and suggest that Mauritian rainfall and the Indian and Asian summer monsoons are linked, as both receive moisture from the southern equatorial Indian Ocean.<br>The anti-phased relationship of climate dynamics between the Mauritian lowlands and western tropical Australia during the middle Holocene is interpreted as a prolonged configuration of a negative mode of the Indian Ocean Dipole OM. A negative IOD-like state is supported by decreased Asian summer monsoon rainfall, higher Austral-Indonesian summer monsoon rainfall and lower temperatures in the Kilimanjaro record. Conversely, repeated decadal-scale wet events in the Mauritian lowlands occurring every similar to 350 years reflect short positive IOD-like events.<br>The onset of ENSO climate variability followed an anomalously strong negative 100-like event and shifted teleconnections from the tropical Indian Ocean to the Pacific Ocean. A shift in ENSO activity around similar to 2600 cal yr BP signifies the decoupling of ENSO from the Atlantic ITCZ. Subsequently, the influence of ENSO on climate in the western Indian Ocean is indicated by increased storm frequency and drought events after 2660 cal yr BP in Mauritius and reduced monsoon activity in the western and eastern Indian Ocean

Photosynthetic pathway variation among C4 grasses along a precipitation gradient in Argentina

Aim Based on the biochemical and physiological attributes of C4 grasses, and on the close association between decarboxylation pathways and the taxa in which they evolved, the hypotheses tested were: (1) that C4 grasses would become progressively more abundant as precipitation decreased, with grasses of the NADP-me subtype more abundant in wetter sites and those of the NAD-me subtype more common in arid regions; and (2) that the distribution of grass subfamilies would also be correlated with annual precipitation. Location The study was conducted along a precipitation gradient in central Argentina, from the eastern Pampas (>1000 mm year)1 ) to the western deserts and semi-deserts near the Andes (<100 mm year)1 ). Methods Percentage of species and relative cover of C3 and C4 grasses (including C4 subtypes) in local floras from 15 lowland sites of central Argentina were obtained from our own unpublished data and from recently published floristic surveys. Pearson correlation coefficients were obtained between grass distribution parameters and the available climatic data. Results The percentage of C4 grasses increased towards the arid extreme and showed a strong negative correlation with annual rainfall (r = )0.74, P < 0.01). Within the C4 subtypes, the NADP-me species showed a higher proportional representation at the wetter extreme, whereas the representation of NAD-me species increased towards the more arid extreme. The relationship of PEP-ck species with climatic parameters in central Argentina was less evident. The distributions of the Panicoideae and Chloridoideae subfamilies along the precipitation gradient were diametrically opposed, with the Panicoideae positively (r = 0.86, P < 0.001) and the Chloridoideae negatively (r = )0.87, P < 0.001) correlated with annual precipitation. Main conclusions Our data are consistent with the broad observation that C4 grasses tend to dominate in areas where the wet season falls in the warmer summer months. In agreement with previously reported results for Africa, Asia, Australia and North America, we describe here for the first time a significant relationship between annual precipitation and the prevalence of the NADP-me and NAD-me photosynthetic pathways along climatic gradients for the Neotropics. We also report for the first time that correlations between C4 species and annual rainfall are stronger when the relative cover of grass species is considered. The association of grass subfamilies Panicoideae and Chloridoideae with rainfall is as strong as that recorded for the NADP-me and NAD-me variants, respectively, suggesting that characteristics other than decarboxylation type may be responsible for the geographic patterns described in this studyFil: Cabido, Marcelo Ruben. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; ArgentinaFil: Pons, Stella Maris. Universidad Nacional de Córdoba. Facultad de Ciencias Agropecuarias; ArgentinaFil: Cantarero, Juan Jose. Universidad Nacional de Río Cuarto. Facultad de Agronomía y Veterinaria; ArgentinaFil: Lewis, Juan Pablo. Universidad Nacional de Rosario. Facultad de Ciencias Agrarias; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Anton, Ana Maria Ramona. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentin

Expanding the cattle reference graph genome

Recent studies have highlighted several key advantages of graph genomes over standard linear reference genomes. These advantages include improvements in read mapping rates at divergent loci and the ability to more accurately call structural variants. However, the availability of graph genomes that represent the extensive diversity of livestock species remain limited. To address this limitation, we have incorporated 15 cattle genomes into an expanded cattle graph genome, including 8 completely novel high-quality cattle assemblies from 4 divergent breeds (Holstein-Friesian, N'Dama, Boran and Nelore), each with high contiguity (N50>10 Mb). This graph genome incorporates over 250 Mb (9.5%) of novel sequence across the primary chromosomes, providing a better reference representation of the bovine pangenome and a key resource for the livestock community

Whole genome analysis of water buffalo and global cattle breeds highlights convergent signatures of domestication

More people globally depend on the water buffalo than any other domesticated species, and as the most closely related domesticated species to cattle they can provide important insights into the shared evolutionary basis of domestication. Here, we sequence the genomes of 79 water buffalo across seven breeds and compare patterns of between breed selective sweeps with those seen for 294 cattle genomes representing 13 global breeds. The genomic regions under selection between cattle breeds significantly overlap regions linked to stature in human genetic studies, with a disproportionate number of these loci also shown to be under selection between water buffalo breeds. Investigation of potential functional variants in the water buffalo genome identifies a rare example of convergent domestication down to the same mutation having independently occurred and been selected for across domesticated species. Cross-species comparisons of recent selective sweeps can consequently help identify and refine important loci linked to domestication